Chinese Journal of Antituberculosis ›› 2020, Vol. 42 ›› Issue (2): 133-142.doi: 10.3969/j.issn.1000-6621.2020.02.010
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ZHANG Lan-yue,GENG Yi-man,JIA Hong-yan,XIAO Jing,LI Zi-hui,PAN Li-ping,SUN Yi-cheng(),ZHANG Zong-de()
Received:
2019-11-29
Online:
2020-02-10
Published:
2020-02-19
Contact:
Yi-cheng SUN,Zong-de ZHANG
E-mail:sunyc@ipbcams.ac.cn;zzd417@163.com
ZHANG Lan-yue,GENG Yi-man,JIA Hong-yan,XIAO Jing,LI Zi-hui,PAN Li-ping,SUN Yi-cheng,ZHANG Zong-de. Preliminary study on the gene function of a novel toxin-antitoxin system MSMEG_3435-3436 in Mycobacterium smegmatis[J]. Chinese Journal of Antituberculosis, 2020, 42(2): 133-142. doi: 10.3969/j.issn.1000-6621.2020.02.010
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URL: http://www.zgflzz.cn/EN/10.3969/j.issn.1000-6621.2020.02.010
材料类型 | 相关特点 | 来源 |
---|---|---|
菌株 | ||
E.coli DH5α | 克隆菌株 | 北京全式金生物技术有限公司 |
M.smegmatis | MC2155 野生株 | 本实验室保存 |
SY3807 | 含pJV53-Cpf1质粒的耻垢分枝杆菌 | 本研究 |
SY6248 | 敲除了MSMEG_3435-3436的耻垢分枝杆菌菌株 | 本研究 |
SY6249 | 敲除了MSMEG_6762-6760的耻垢分枝杆菌菌株 | 本研究 |
SY3126 | 含pJV53-GFP质粒的的耻垢分枝杆菌菌株 | 本研究 |
SY3328 | MSMEG_1277-1278位置替换为LacZ的耻垢分枝杆菌菌株 | 本研究 |
SY3309 | MSMEG_1283-1284位置替换为LacZ的耻垢分枝杆菌菌株 | 本研究 |
SY6407 | MSMEG_3435-3436位置替换为LacZ的耻垢分枝杆菌菌株 | 本研究 |
SY3310 | MSMEG_4447-4448位置替换为LacZ的耻垢分枝杆菌菌株 | 本研究 |
SY3311 | MSMEG_5635-5634位置替换为LacZ的耻垢分枝杆菌菌株 | 本研究 |
质粒 | ||
pJV53 | 表达gp60 和gp61 重组蛋白的质粒,含卡那霉素抗性元件 | 文献[ |
pMV261 | 含Hsp60启动子的整合质粒,含卡那霉素抗性元件 | 文献[ |
pJV53-gfp | 表达gp60 和gp61 重组蛋白的带有gfp基因,含卡那霉素抗性元件的质粒 | 文献[ |
pJV53-Cas12a | 表达gp60 和gp61 重组蛋白的诱导Pmyc1tetO启动子控制 Cas12a 表达,含卡那霉素抗性元件的质粒 | 文献[ |
pCR-Hyg | crRNA插入Hsp60 启动子下游BpmⅠ和HindⅢ位点之间,含潮霉素抗性元件的质粒 | 文献[ |
pYC601 | 无水四环素诱导表达,含潮霉素抗性元件的质粒 | 文献[ |
pYC2034 | MSMEG_3435-3436 crRNA插入pCR-Hyg的BpmⅠ和HindⅢ位点之间,含潮霉素抗性元件的质粒 | 本研究 |
pYC2033 | MSMEG_6762-6760 crRNA插入pCR-Hyg的 BpmⅠ和HindⅢ位点之间,含潮霉素抗性元件的质粒 | 本研究 |
pYC2037 | pUC19包含dsDNA同源臂以删除MSMEG_3435-3436,含氨苄青霉素抗性元件的质粒 | 本研究 |
pYC2036 | pUC19包含dsDNA同源臂以删除MSMEG_6762-6760,含氨苄青霉素抗性元件的质粒 | 本研究 |
pYC2073 | 把MSMEG_3436基因放在pYC601的Pmyc1tetO启动子下,含潮霉素抗性元件的质粒 | 本研究 |
pYC2074 | 把MSMEG_3435-3436基因放在pYC601的Pmyc1tetO启动子下,含潮霉素抗性元件的质粒 | 本研究 |
pYC2076 | 把MSMEG_6760基因放在pYC601的Pmyc1tetO启动子下,含潮霉素抗性元件的质粒 | 本研究 |
pYC2077 | 把MSMEG_6762-6760基因放在pYC601的Pmyc1tetO启动子下,含潮霉素抗性元件的质粒 | 本研究 |
引物名称 | 引物序列(5'~3') |
---|---|
MSMEG_3436F | TCCGCATGCGGAGGAATCAGGTGAAACGACTCGATCTCGT |
MSMEG_3436R | GTCCCCAATTAATTAGCTAACTATTCGGGCCACCGCGAGG |
MSMEG_3436-3435F | TCCGCATGCGGAGGAATCAGATGACTGAGACCGCAGATCG |
MSMEG_3436-3435R | GTCCCCAATTAATTAGCTAACTATTCGGGCCACCGCGAGG |
MSMEG_6760F | TCCGCATGCGGAGGAATCAGATGCCCGTGACCGATGTGAA |
MSMEG_6760R | GTCCCCAATTAATTAGCTAATCACGCAGTGAGCAGCGCGT |
MSMEG_6760-6762F | TCCGCATGCGGAGGAATCAGGTGTGGGTGACCGTGATCGA |
MSMEG_6760-6762R | GTCCCCAATTAATTAGCTAATCACGCAGTGAGCAGCGCGT |
MSMEG_3435-3436 crRNA Top | ATGTCGAACTCACATTGGCCCCGCTGCA |
MSMEG_3435-3436 crRNA Bottom | AGCTTGCAGCGGGGCCAATGTGAGTTCGACATCT |
MSMEG_6760-6762 crRNA Top | ATACATCGGTCACGGGCATGTCAGTCCA |
MSMEG_6760-6762 crRNA Bottom | AGCTTGGACTGACATGCCCGTGACCGATGTATCT |
MSMEG_1277F | ATGCGGAGGAATCAGGATCCATGCCGTCGCTGAACATCGA |
MSMEG_1277R | GTCCCCAATTAATTAGCTAATCACGCCAAGCGGCGGTTGA |
MSMEG_1283F | ATGCGGAGGAATCAGGATCCATGGCTCTAAGCATCAAACA |
MSMEG_1283R | GTCCCCAATTAATTAGCTAATCAGGACGGCAGACCGCGGT |
MSMEG_3435F | ATGCGGAGGAATCAGGATCCATGACTGAGACCGCAGATCG |
MSMEG_3435R | GTCCCCAATTAATTAGCTAATCACCGCTGCGCAGGAGCCA |
MSMEG_4447F | ATGCGGAGGAATCAGGATCCATGACTCCCGCGCGTGACCG |
MSMEG_4447R | GTCCCCAATTAATTAGCTAATTAGGCGTCGTCCCAGTCGAC |
MSMEG_5635F | ATGCGGAGGAATCAGGATCCATGGGATTCCTGGACAAGGC |
MSMEG_5635R | GTCCCCAATTAATTAGCTAATTACTGCTGTGGTTCTTGAG |
MSMEG_3435 up HR F | TCTTCGCTATTACGCCAGCTTCCAGTTCAACCGAGACTGC |
MSMEG_3435up HR R | CGCAATTGTCTTGGCCATGACACGCCTCCATGTAGCAGT |
MSMEG_3435 down HR F | GGACTAGTTCGACGTTCTATGACAACAGCG |
MSMEG_3435 down HR R | CCCAAGCTTATTTCGGTTTGGTGGTCCACT |
LacZ F | ACTGCTACATGGAGGCGTGTCATGGCCAAGACAATTGCG |
LacZ R | CCCGGGATCCGATATCTAGACTTATTTTTGACACCAGAC |
UD-LacZ F | TCTAGATATCGGATCCCGGG |
UD-LacZ R | AGCTGGCGTAATAGCGAAGA |
F in Us for MSMEG_3435-3436+ | AGTGAATTCGAGCTCGGTACCACCGGTGATCAACGTCAAC |
R in Us for MSMEG_3435-3436 | GAAGCGAGTGACCCGATCTG |
F in Ds for MSMEG_3435-3436+ | CAGATCGGGTCACTCGCTTCGAATAGATTGTCGCGGTTCAG |
R in Ds for MSMEG_3435-3436+ | TGCATGCCTGCAGGTCGACTGCCATTTCGCTTCGGTGAG |
F in Us for MSMEG_6760-6762+ | AGTGAATTCGAGCTCGGTACTGACCGACGAGTTGCTCGAAA |
R in Us for MSMEG_6760-6762 | TCGGCCATCAACCAGATCGA |
F in Ds for MSMEG_6760-6762+ | TCGATCTGGTTGATGGCCGACACACAACGTACAACCATCTG |
R in Ds for MSMEG_6760-6762+ | TGCATGCCTGCAGGTCGACTGATGTTCGGCACCAGGTTCT |
MSMEG_3435 up F | CGTCCAGTTCAACCGAGACT |
MSMEG_ 6760 up F | TACCGCGTGATGGCAAAGGA |
F in Us for MSMEG_3435-3436 | CACCGGTGATCAACGTCAAC |
R in Ds for MSMEG_3435-3436 | GCCATTTCGCTTCGGTGAG |
F in Us for MSMEG_6760-6762 | TGACCGACGAGTTGCTCGAAA |
R in Ds for MSMEG_6760-6762 | GATGTTCGGCACCAGGTTCT |
F in down HR | GGACTAGTTCGACGTTCTATGACAACAGCG |
R in down HR | CCCAAGCTTATTTCGGTTTGGTGGTCCACT |
F | TCTAGATATCGGATCCCGGG |
R | AGCTGGCGTAATAGCGAAGA |
F in up HR | TCTTCGCTATTACGCCAGCTTCCAGTTCAACCGAGACTGC |
R in up HR | CGCAATTGTCTTGGCCATGACACGCCTCCATGTAGCAGT |
菌株 | 吸光度值 | 时间 (min) | β-半乳糖苷酶活 性(MU, | t值 | P值 | ||
---|---|---|---|---|---|---|---|
A600值( | A420值( | A550值 | |||||
SY3328:: con | 1.025±0.006 | 0.662±0.029 | 0.048 | 5.0 | 376.50±17.13 | 2.272 | 0.086 |
SY3328:: MSMEG_1277 | 0.991±0.027 | 0.550±0.025 | 0.047 | 5.0 | 315.50±20.71 | ||
SY3309:: con | 1.018±0.016 | 0.318±0.015 | 0.050 | 4.0 | 189.00±12.24 | 1.795 | 0.147 |
SY3309:: MSMEG_1283 | 1.067±0.014 | 0.297±0.007 | 0.052 | 4.0 | 160.70±9.89 | ||
SY6407:: con | 0.819±0.006 | 0.480±0.021 | 0.047 | 18.0 | 225.20±9.95 | 1.319 | 0.258 |
SY6407:: MSMEG_3435 | 0.815±0.003 | 0.476±0.006 | 0.047 | 19.0 | 211.70±2.57 | ||
SY3310: con | 0.932±0.031 | 0.417±0.022 | 0.047 | 5.5 | 221.40±12.07 | 1.949 | 0.123 |
SY3310: MSMEG_4447 | 0.839±0.029 | 0.317±0.018 | 0.047 | 5.0 | 186.60±13.17 | ||
SY3311:: con | 0.988±0.001 | 0.402±0.013 | 0.048 | 6.0 | 179.10±5.87 | 2.562 | 0.063 |
SY3311:: MSMEG_5635 | 0.944±0.037 | 0.290±0.030 | 0.052 | 5.5 | 127.70±19.21 |
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